GBStools is an R package for the analysis of genotyping-by-sequencing (GBS) variants. It is still under development and described in more detail in a manuscript under review. The version posted here
has been designed for use with F2 or S1 populations. You can also download
a tutorial script and data set illustrating its use in diploid potato. Please contact me if you find bugs or have constructive suggestions for improving the reference manual.